These Molecules Fight Viruses by Cracking Their Shells
Researchers have discovered that a certain kind of molecule can break through the shells viruses use to protect their DNA.
The molecule could aid in the fight against the hepatitis B virus, which can cause liver failure and liver cancer.
It’s estimated that 2 billion people worldwide have had a hepatitis B virus infection in their lifetime, with about 250 million—including 2 million Americans—living with chronic infection. Although a vaccine exists, there is no cure.
The study, which appears in the journal eLife, explains how the structure of the hepatitis B virus changes when bound to an experimental drug. Members of this new class of antiviral drug are now in clinical trials.
“Our discovery suggests that this same drug could attack hepatitis B virus on multiple fronts—both preventing replication and killing new copies of the virus,” says senior author Adam Zlotnick, a professor in the Indiana University Bloomington College of Arts and Sciences’ molecular and cellular biochemistry department. “If we’re smart, we can take advantage of the multiple ways this drug can work at the same time.”
A virus reproduces by hijacking a host’s cellular machinery to produce more of the virus. The majority of viruses protect their genetic material—DNA or RNA—inside a protein shell called a capsid.
“…viral capsids aren’t as impenetrable as previously thought…”
For the past 20 years, Zlotnick’s lab has conducted research to stop viral infections by studying the physics of viruses, focusing on how capsids are formed.
“The reaction is a bit like throwing a deck of cards in the air to build the Taj Mahal—a highly complex structure seemingly emerging from chaos,” Zlotnick says.
Zlotnick’s work helped discover a class of molecules called core protein allosteric modulators, or CpAMs, that disrupt capsid protein assembly.
CpAM molecules attack viruses by causing their shells to assemble incorrectly, interrupting the life cycle of the virus. Previously, CpAMs were seen as only able to disrupt a virus during formation of the capsid, after which its DNA was protected inside a hard casing.
This new study, however, finds the molecule can break apart the shell even after it has already assembled.
To make their discovery, researchers bound the CpAM to a chemical called TAMRA—a crimson-colored dye used in some red lipstick—to make it fluorescent and easier to detect in experiments. Using cryo-electron microscopy, they found the small CpAM molecule could make the large, soccer ball-shaped virus capsid bend and distort.
“The big implication is viral capsids aren’t as impenetrable as previously thought,” Zlotnick says. “The other implication, which may be even more important, is that if this type of interference works against hepatitis B virus, it might also work against other viruses.
“About half of known virus families have soccer ball-like capsids; examples include polio and herpes,” he adds. “This study may lead to better treatments against them since the mechanisms behind capsid disruption could lead to drugs against any of them.”
Zlotnick also is the co-founder of Assembly Biosciences, a NASDAQ-listed company, which has CpAMs in clinical trials. Although the molecule used in this study isn’t one of the molecules under clinical trial, Zlotnick says the mechanism sheds light on the behavior of the experimental drugs.
Next, Zlotnick hopes to conduct similar studies on the CpAMs under clinical trial.
Materials provided by Indiana University. Note: Content may be edited for style and length.