Open Source Platforms
An open source library of common bioinformatics functions, intended to simplify the creation of life science applications.
An automated phylogenomic inference application for large-scale protein phylogenetic analysis. It has been applied to automated genome tree construction and metagenomic sequence phylotyping.
An open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki.
A suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
An application framework implemented in C++ that has been specifically designed reduce development times in the field of Computational Molecular Biology and Molecular Modelling.
A free and open source workbench for the life sciences.
Tools for the analysis and comprehension of high-throughput genomic data.
An open-source project dedicated to providing a Java framework for processing biological data.
An international association of users & developers of open source Perl tools for bioinformatics, genomics and life science
PHP for bioinformatics
A set of freely available tools for biological computation written in Python by an international team of developers.
Open source bioinformatics library for Ruby.
The BuddySuite modules are designed to be ‘one-stop-shop’ command line tools for common biological data file manipulations.
A free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community.
An open, web-based platform for data intensive biomedical research.
GenePattern provides analytical tools for the analysis of gene expression (RNA-seq and microarray), sequence variation and copy number, proteomic, flow cytometry, and network analysis.
A Java-based open-source platform for integrated genomics.
The Generic Model Organism Database project is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.
A bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment.
A cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface.
A software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
A fast, free and highly customisable genome browser to view and explore big genome datasets.
An open source data warehouse built specifically for the integration and analysis of complex biological data.