0-9A / B / C / D / E / F / G / H / I / J / K / L / M / N / O / P / Q / R / S / T / U / V / W / X / Y / Z

0-9

.NET Bio

An open source library of common bioinformatics functions, intended to simplify the creation of life science applications.

 

A

AMPHORA

An automated phylogenomic inference application for large-scale protein phylogenetic analysis. It has been applied to automated genome tree construction and metagenomic sequence phylotyping.

Anduril

An open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki.

AutoDock

A suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.

 

B

Biochemical Algorithms Library (BALL)

An application framework implemented in C++ that has been specifically designed reduce development times in the field of Computational Molecular Biology and Molecular Modelling.

Bioclipse

A free and open source workbench for the life sciences.

Bioconductor

Tools for the analysis and comprehension of high-throughput genomic data.

BioJava

An open-source project dedicated to providing a Java framework for processing biological data.

BioJS

A library of JavaScript components enabling you to visualise and process data using current web technologies.

BioPerl

An international association of users & developers of open source Perl tools for bioinformatics, genomics and life science

BioPHP

PHP for bioinformatics

Biopython

A set of freely available tools for biological computation written in Python by an international team of developers.

BioRuby

Open source bioinformatics library for Ruby.

BuddySuite

The BuddySuite modules are designed to be ‘one-stop-shop’ command line tools for common biological data file manipulations.

 

E

EMBOSS

A free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community.

 

G

Galaxy

An open, web-based platform for data intensive biomedical research.

GenePattern

GenePattern provides analytical tools for the analysis of gene expression (RNA-seq and microarray), sequence variation and copy number, proteomic, flow cytometry, and network analysis. 

GeWorkbench

A Java-based open-source platform for integrated genomics.

GMOD

The Generic Model Organism Database project is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.

GenGIS

A bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment.

GenomeSpace

A cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface.

GENtle

A software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.

 

I

Integrated Genome Browser

A fast, free and highly customisable genome browser to view and explore big genome datasets.

InterMine

An open source data warehouse built specifically for the integration and analysis of complex biological data.